PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008981-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 608aa    MW: 68080.8 Da    PI: 7.0066
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008981-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09486534348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT+ E  +l+++v q G g+W+ I r       +Rt  ++k++w+++l
  WALNUT_00008981-RA 486 SWTPSEVMRLIEGVSQCGVGRWAEIKRLSFpssSRRTSVDLKDKWRNLL 534
                         5**************************9878**9*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.81479538IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-11480535IPR009057Homeodomain-like
SuperFamilySSF466891.29E-14481540IPR009057Homeodomain-like
SMARTSM007177.7E-9483536IPR001005SANT/Myb domain
PfamPF002497.1E-7486534IPR001005SANT/Myb domain
CDDcd116608.95E-19487535No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MNTTSKDCSI TFDEIANMFT PKFSEVDLSL FAASEHEAIG LEHFLMEPKC NRNLIGVVDF  60
ETFHSQKFFD VEDFSGAIEH SCSCNFTTEG IHMWKISTKD AVCSNSAKEV REEKRESIED  120
MLNDNVFDGK TRLPTTGKEF GLDAKSADKL VILDNGPCKE SYLGNADLES LSPGFDERDY  180
VAEISYMSSA SVPALQFTHN HNSPMLNQMT VHELHEAFKS VFGRETLVTD KQWLKHRVLF  240
GLRNQVESDS DLNHIKCGTT SYKTEDKTLC LSSSDSSRSA ASSIKCVLGD ETMSLDWHVG  300
RKGLAGLDLQ TTSMELSEIE LCSHDGGDKA LVTRKRLRKP PKRYIEESLE ANSKYCKGKS  360
GAVRPRKCLK EFGTSQLACE DKPFKGSCIQ VPFGLPIEEG HVKINASYWG ATSKAALLLE  420
LPWHLVDPFS TEFQDSENCR DDRISSPKQL VTEPSAAASQ DEISEDEHVT RSIVRKGSSR  480
RKHHISWTPS EVMRLIEGVS QCGVGRWAEI KRLSFPSSSR RTSVDLKDKW RNLLRACCVQ  540
LQSKRKVKQG QKQASHRVPE SVLWRVRELA TTYPYPRESN SKVAYTAPIS SSFPAAIQNR  600
SVALSTSV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150181313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-38TRF-like 6